[phenixbb] NCS in phenix.refine

Pavel Afonine pafonine at lbl.gov
Wed Dec 13 08:17:36 PST 2006

Hi Alessandro,

to get information about NCS in phenix.refine, please go to (PHENIX 
refinement manual):
and search for "Using NCS restraints in standard refinement" paragraph. 
Basically all you need to do is to specify your NCS groups.

Simulated annealing should preserve NCS restraints. Let me know if it is 
not the case for some reasons.

Please don't hesitate to ask more questions if something is not clear!

Alessandro S. Nascimento wrote:
> Hi all,
> I've searched in phenix manuals but I didn't find how to deal with ncs 
> in parameter file. Also, how to prepare simulated annealing keeping ncs 
> restraints? Is it already possible in 1.24b version? Any idea?
> thanks,
> - alessandro
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