[phenixbb] Autobuild peptide?

ckielkop ckielkop at jhsph.edu
Thu Mar 9 13:31:41 PST 2006

We have a molecular replacement RNA structure with a bound peptide. I'd like
phenix autobuild the peptide, because only a portion of it is bound and we'd
like an unbiased, silicon opinion about what that portion is.

 It's not clear to me how to proceed with this in phenix- we have a
beautiful electron density map from CNS, coordinates for the RNA portion,
and peptide sequence.

Thanks for any guidance!

Clara L. Kielkopf
Assistant Professor
Biochemistry and Molecular Biology
Johns Hopkins University
Rm. W8708 BSPH
615 N. Wolfe St.
Baltimore, MD 21205
Ph. 443-287-4546

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