[phenixbb] Interpreting Cd atoms
James Fraser
jamesfraser at berkeley.edu
Sun Apr 15 20:08:05 PDT 2007
Hello,
I'm trying to refine a structure with Cadmium bound. Is there a
standard way to define "energy type symbols"?
Thanks,
James
Number of atoms with unknown nonbonded energy type symbols: 14
"CD CD D 1 "
"CD CD D 2 "
"CD CD D 3 "
"CD CD D 4 "
"CD CD D 5 "
"CD CD D 6 "
"CD CD D 7 "
"CD CD D 8 "
"CD CD D 9 "
"CD CD D 10 "
... (remaining 4 not shown)
Time building chain proxies: 2.36, per 1000 atoms: 1.27
Sorry: Fatal problems interpreting PDB file:
Number of atoms with unknown nonbonded energy type symbols: 14
Please edit the PDB file to resolve the problems and/or supply a
CIF file with matching restraint definitions. Note that
elbow.builder is available to create restraint definitions.
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