[phenixbb] Forcing autobuild wizard to do a complete rebuild

Schubert, Carsten [PRDUS] CSCHUBER at prdus.jnj.com
Mon Dec 3 10:15:19 PST 2007

Thanks Tom, Peter

As a follow-up question, which may have been addressed in the manual, but I don't recall seeing it: Does the (wizard) command line accept ALL keywords under the autobuild/autosol scope or ONLY the ones listed as "command-line-only"? I assumed (wrongfully?) that the command line only accepts the keywords explicitely listed under "command-line-only", and the rest is reserved for scripts/input files. 

I know, I could test this out, but a general clarification by the experts and an addition to the manual, if necessary, would be great.



> -----Original Message-----
> From: phenixbb-bounces at phenix-online.org
> [mailto:phenixbb-bounces at phenix-online.org]On Behalf Of Tom 
> Terwilliger
> Sent: Monday, December 03, 2007 12:59 PM
> To: PHENIX user mailing list
> Subject: Re: [phenixbb] Forcing autobuild wizard to do a complete
> rebuild
> Hi Carsten,
> You can tell the autobuild wizard from the command line:
> rebuild_in_place=False
> You can also set this in the GUI on the 2nd input screen at the top 
> of the screen.
> I hope that helps!
> -Tom T
> At 10:17 AM 12/3/2007, you wrote:
> >Content-class: urn:content-classes:message
> >Content-Type: multipart/alternative;
> >         boundary="----_=_NextPart_001_01C835D0.68A40BB9"
> >
> >Hi,
> >
> >I am using the autobuild wizard in the latest phenix release to 
> >rebuild a model from a MR solution.  Since the MR-template I used 
> >has been modified with chainsaw, its sequence identity to the target 
> >sequence is fairly high. The autobuild wizard therefore uses the 
> >rebuilt-in-place mode to rebuild the model. How can I force the 
> >wizard to do a complete rebuild?
> >
> >Thanks
> >
> >         Carsten
> >_______________________________________________
> >phenixbb mailing list
> >phenixbb at phenix-online.org
> >http://www.phenix-online.org/mailman/listinfo/phenixbb
> Thomas C. Terwilliger
> Mail Stop M888
> Los Alamos National Laboratory
> Los Alamos, NM 87545
> Tel:  505-667-0072                 email: terwilliger at LANL.gov
> Fax: 505-665-3024                 SOLVE web site: 
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