[phenixbb] chain definition in phenix
Tom Terwilliger
terwilliger at lanl.gov
Tue Dec 18 09:15:00 PST 2007
Hi Kornelius,
I am checking this out...but for the moment here is a solution:
You can use 2-character chain codes in phenix. They go in the usual
column for chain ID and the column just before it.
So columns 21-22 in your PDB file could be:
" A" (chain A, usual syntax)
" B"
" C" ...etc
" 0"
" 1"
" 9"
"AA" (chain AA, recognized only by hybrid-36 compatible programs)
"AB"
"AC" ...etc
-Tom T
At 06:34 AM 12/18/2007, you wrote:
>Dear all,
>
>I'm trying to refine/rebuild a structure of 48 identical chains. In
>Refmac the small letters a, b, c and 0 1 2 for the chains work quite
>well and are distinguished. However that does not apply to Phenix
>which sees A equal to a. What might be the solution to use?
>
>Thanks and best wishes
>
>Kornelius
>
> ----------------------------------------------
> Kornelius Zeth
> Max Planck Institute for Developmental Biology
> Dept. Protein Evolution
> Spemannstr. 35
> 72076 Tuebingen, Germany
> kornelius.zeth at tuebingen.mpg.de
> Tel -49 7071 601 323
> Fax -49 7071 601 349
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: terwilliger at LANL.gov
Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web
site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
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