[phenixbb] input HA
Tom Terwilliger
terwilliger at lanl.gov
Tue Feb 13 05:18:29 PST 2007
Hi Morton,
I'm sorry to make it difficult!
Here are 2 formats that should work:
1. PDB format (I'm not sure why the one from cns
failed...can you send me a line or two from that so I can make it work?):
HETATM 1 SE SE 3 73.920 0.324 3.857 0.92 54.60 Se
HETATM 2 SE SE 4 39.591 8.262 2.158 0.55 60.00 Se
2. Plain fractional xyz, with or without the word "xyz".
For example see: $PHENIX/examples/gene-5-mad/sites.xyz :
xyz 0.0271 0.8074 0.0657
xyz 0.0239 0.0116 -0.0965
Please let me know if this doesn't do it!
-Tom T
At 03:52 AM 2/13/2007, Morten Grøftehauge wrote:
>Ok, I give up.
>
>What is the correct format for a heavy atom file
>for AutoSOL? I've tried both the outputs from
>FFT, CNS pdbs and sdbs and I've tried just
>putting them on a line like you do for SHARP:
>ATOM Br - 0.0120 0.5731 0.2740
>but none of them are accepted by Phenix.
>Any help please?
>
>--
>Morten K Grøftehauge
>PhD student
>Department of Molecular Biology
>Gustav Wieds Vej 10 C
>8000 Aarhus C - Denmark
>Phone: +45 89 42 50 10
>Fax: +45 86 12 31 78
><http://www.bioxray.dk>www.bioxray.dk
>
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: terwilliger at LANL.gov
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