[phenixbb] R-factor problem !!!

john kryst protkryst at gmail.com
Mon Jul 30 10:05:17 PDT 2007

Hi all !!!

       Thanks a lot to all of you for your suggestions...  As many of you
have guessed it is a problem of Bulk solvent correction. When i generated
the pdb file using 0 cycles, the values are very much comparable with
phenix.refine. Interestingly CNS-1.2 xtal_pdbsubmission gave the same result
as phenix.refine. which once again confirms that its a bulk solvent
correction problem.

As Huanwang suggested, pdb_extract could generate submission ready cif file.

Once again thanks to all of you... But still i have problem with rmsd_bonds.
I am using phenix.refine version 2007_05_29_2026 . Refmac gave rmsd_bonds
0.009 and rmsd_angles1.211 but phenix gave rmsd_bonds 0.006 & rmsd_angles

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