[phenixbb] R-factor problem !!!
PDAdams at lbl.gov
Mon Jul 30 10:13:31 PDT 2007
you should probably download the latest prerelease of PHENIX (d7),
from the web page. This contains a version of phenix.refine from
On Jul 30, 2007, at 10:05 AM, john kryst wrote:
> Hi all !!!
> Thanks a lot to all of you for your suggestions... As many
> of you have guessed it is a problem of Bulk solvent correction.
> When i generated the pdb file using 0 cycles, the values are very
> much comparable with phenix.refine. Interestingly CNS-1.2
> xtal_pdbsubmission gave the same result as phenix.refine. which
> once again confirms that its a bulk solvent correction problem.
> As Huanwang suggested, pdb_extract could generate submission ready
> cif file.
> Once again thanks to all of you... But still i have problem with
> rmsd_bonds. I am using phenix.refine version 2007_05_29_2026 .
> Refmac gave rmsd_bonds 0.009 and rmsd_angles1.211 but phenix gave
> rmsd_bonds 0.006 & rmsd_angles 0.793.
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> phenixbb at phenix-online.org
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