[phenixbb] AutoSol problem
Ben Eisenbraun
bene at crystal.harvard.edu
Tue Jul 31 09:33:05 PDT 2007
Hi-
One of my users is running the Linux 64-bit version of Phenix-1.3b and
they are getting the following message at the end of their logfile:
************************************************************
Failed to carry out AutoSol_scale_and_analyze_mad:
None of the solve versions worked
************************************************************
The solve part of Phenix looks like it built correctly:
$ ls -l phenix-1.3b/build/intel-linux-2.6-x86_64/solve_resolve/exe/
-rwxr-xr-x 1 sbgrid sbgrid 1561344 Jun 27 16:55 extract_segment
-rwxr-xr-x 1 sbgrid sbgrid 1561344 Jun 27 16:55 extract_segment_pair
-rwxr-xr-x 1 sbgrid sbgrid 3483160 Jun 27 16:55 resolve
-rwxr-xr-x 1 sbgrid sbgrid 3483576 Jun 27 16:55 resolve_extra_huge
-rwxr-xr-x 1 sbgrid sbgrid 3483256 Jun 27 16:55 resolve_giant
-rwxr-xr-x 1 sbgrid sbgrid 3482968 Jun 27 16:55 resolve_huge
-rwxr-xr-x 1 sbgrid sbgrid 1768392 Jun 27 16:55 resolve_pattern
-rwxr-xr-x 1 sbgrid sbgrid 1768392 Jun 27 16:55 resolve_pattern_extra_huge
-rwxr-xr-x 1 sbgrid sbgrid 1768392 Jun 27 16:55 resolve_pattern_giant
-rwxr-xr-x 1 sbgrid sbgrid 1768392 Jun 27 16:55 resolve_pattern_huge
-rwxr-xr-x 1 sbgrid sbgrid 1547840 Jun 27 16:55 segment_library
-rwxr-xr-x 1 sbgrid sbgrid 1575648 Jun 27 16:55 side_chains
-rwxr-xr-x 1 sbgrid sbgrid 1566208 Jun 27 16:55 side_chains_update
-rwxr-xr-x 1 sbgrid sbgrid 5327984 Jun 27 16:55 solve
-rwxr-xr-x 1 sbgrid sbgrid 11331152 Jun 27 16:55 solve_extra_huge
-rwxr-xr-x 1 sbgrid sbgrid 6529136 Jun 27 16:55 solve_giant
-rwxr-xr-x 1 sbgrid sbgrid 7729424 Jun 27 16:55 solve_huge
-rwxr-xr-x 1 sbgrid sbgrid 11393392 Jun 27 16:55 solve_mx
$ file phenix-1.3b/build/intel-linux-2.6-x86_64/solve_resolve/exe/solve
phenix-1.3b/build/intel-linux-2.6-x86_64/solve_resolve/exe/solve: ELF 64-bit
LSB executable, AMD x86-64, version 1 (SYSV), for GNU/Linux 2.4.0, statically
linked, for GNU/Linux 2.4.0, stripped
We do have a standalone Solve install with its corresponding SOLVEDIR, etc,
environment variables. Could that be confusing Phenix?
I have the complete logfile, but it's rather long. If it would help, it
can be made available.
Any ideas on what I should do to troubleshoot this?
Thanks.
-ben
--
Ben Eisenbraun
Structural Biology Grid
http://sbgrid.org/
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