[phenixbb] AutoSol problem

Ben Eisenbraun bene at crystal.harvard.edu
Tue Jul 31 12:30:57 PDT 2007


Hi Tom-

> 1. Just run solve by itself:
> 
> phenix.solve
> 
> Does this load up? If you then say
> 
> end
> 
> does it end nicely?

Yes to both.  

[bene at schl4][/nfs/home/bene] phenix.solve
binary=/programs/i386-linux/phenix/phenix-1.3b-x86_64/phenix-1.3b/build/intel-linux-2.6-x86_64/solve_resolve/exe/solve
SOLVEDIR=/programs/i386-linux/phenix/phenix-1.3b-x86_64/phenix-1.3b/solve_resolve/ext_ref_files
SYMOP=/programs/i386-linux/phenix/phenix-1.3b-x86_64/phenix-1.3b/solve_resolve/ext_ref_files/symop.lib
SYMINFO=/programs/i386-linux/phenix/phenix-1.3b-x86_64/phenix-1.3b/solve_resolve/ext_ref_files/syminfo.lib
CCP4_OPEN=UNKNOWN

<snip>
               (version 2.13 of 24-Jun-2007 / Size =  6)

> 2.  If that works, can you send me the output where SOLVE bombed in 
> phenix. There should be a log file like: LAST.LOG in the working 
> directory that should have error messages at the end.  Alternatively, 
> if you can send the very last log files written to the TEMP0 
> subdirectory of the working directory that would do it.

My user reports that the LAST.LOG is missing, and that there are no log 
files in the TEMP0 directory.  Just .sca and .sym files.
 
> 3. If you can send me the whole logfile that would be great too.

Mailed directly.

Thanks Tom.

-b

--
Ben Eisenbraun
Structural Biology Grid
http://sbgrid.org/



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