[phenixbb] sugar links in phenix.refine

Ralf W. Grosse-Kunstleve rwgk at cci.lbl.gov
Thu Jun 21 13:31:04 PDT 2007


> Will it recognized NAS-ASN, beta1-4, alpha1-4, etc linkages between sugars?

This is not automated (mainly out of fear of accidentally doing the 
wrong thing). You have to specify the linkages using the

  refinement.pdb_interpretation.apply_cif_link

scope as explained here:

  http://www.phenix-online.org/download/cci_apps/
    o phenix.refine  [Documentation] 

Ralf



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