[phenixbb] phenix.refine python error !!
Pavel Afonine
PAfonine at lbl.gov
Thu Oct 11 23:14:03 PDT 2007
Hi John,
looking at the output I see that this is a bug; sorry for this. It will
be fixed for the next (pre-)release.
Pavel.
john kryst wrote:
> Hi all !!!
>
> I have recently updated phenix version to
> phenix-1.3b-rc3. After that when i run phenix.refine it runs properly.
> But while writing the pdb file it is giving the following error.
>
> Traceback (most recent call last):
> File
> "/usr/local/phenix-1.3b-rc3/phenix/phenix/command_line/refine.py",
> line 5, in <module>
> command_line.run(command_name="phenix.refine", args=sys.argv[1:])
> File "/usr/local/phenix-
> 1.3b-rc3/phenix/phenix/refinement/command_line.py", line 89, in run
> refine_object.write_refined_pdb(f_pdb)
> File
> "/usr/local/phenix-1.3b-rc3/phenix/phenix/refinement/driver.py", line
> 1101, in write_refined_pdb
> pdb_header.write_remark_3(info = m_info, out = f)
> File "/usr/local/phenix-1.3b-rc3/mmtbx/mmtbx/pdb_header.py", line
> 21, in write_remark_3
> info.show_remark_3(out = out)
> File "/usr/local/phenix- 1.3b-rc3/mmtbx/mmtbx/model_statistics.py",
> line 483, in show_remark_3
> self.data_x.show_remark_3(out = out)
> File "/usr/local/phenix-1.3b-rc3/mmtbx/mmtbx/f_model.py", line 2034,
> in show_remark_3
> bin.n_work, bin.n_free, bin.r_work*100., bin.r_free*100.)
> TypeError: unsupported operand type(s) for *: 'NoneType' and 'float'
>
> I am using fedora 5, python 2.4.2. I have used
> phenix-installer-1.3b-rc3-intel-linux-2.4.tar . It was working fine in
> the last build. Google'ing the error didn't help much.
>
> Thanks for your inputs.
>
> regards
> John
> ------------------------------------------------------------------------
>
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