[phenixbb] phenix.refine error

Jianghai Zhu jzhu at cbr.med.harvard.edu
Tue Sep 11 19:16:12 PDT 2007


I was trying the twinning refinement by phenix.refine and I got the  
following error messages during TLS refinement.

Traceback (most recent call last):
   File "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/command_line/ 
refine.py", line 5, in <module>
     command_line.run(command_name="phenix.refine", args=sys.argv[1:])
   File "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/refinement/ 
command_line.py", line 81, in run
   File "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/refinement/ 
driver.py", line 1244, in run
     log                     = log)
   File "/nfs/home/jzhu/cci_apps_sources/phenix/phenix/refinement/ 
strategies.py", line 866, in refinement_machine
     h_params                  = h_params)
   File "/nfs/home/jzhu/cci_apps_sources/mmtbx/mmtbx/refinement/ 
adp_refinement.py", line 175, in __init__
     macro_cycle = macro_cycle)
   File "/nfs/home/jzhu/cci_apps_sources/mmtbx/mmtbx/tls/tools.py",  
line 600, in __init__
     fmodel.info().show_targets(text = prefix+" start model", out = out)
AttributeError: 'info' object has no attribute 'show_targets'

Could somebody help me?  Thanks.


PS.  the version is 2007_08_18_1856.

Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
Ph: 617-278-3211
Fx: 618-278-3232

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