[phenixbb] Oxygen atoms in phenix.refine

Daniele de Sanctis de.sanctisd at gmail.com
Tue Sep 25 05:19:21 PDT 2007

Dear all,

i'm experiencing a weird problem with phenix.refine. After a
phenix.refine run with a pdb file that doesn't contain the atoms N,
CA, C, and O all together (with sidechains atoms between C and O) the
O atoms are displaced from their position. Is this a know problem? Is
there anyone that have suggestions how to re-edit the pdb file
accordingly instead of doing cut-past for too many atoms?



Daniele de Sanctis, PhD

         Homo sum humani nil alienum a me puto
phone ++ 351 21 4469 662            fax ++ 351 21 4433 664

e-mail de.sanctisd at gmail.com, sanctis at itqb.unl.pt

Mailing address:
ITQB, Av. República, Apartado 127
2781-901 Oeiras

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