[phenixbb] phenix.refine writing maps error
Paul Adams
PDAdams at lbl.gov
Fri Aug 22 10:28:09 PDT 2008
Please upgrade to the latest version of Phenix.
Paul Adams
Sent from my iPhone
On Aug 22, 2008, at 10:16 AM, Francis E Reyes <Francis.Reyes at colorado.edu
> wrote:
> Writing refined structure to PDB file:
> /Users/francisreyes/Desktop/No_Sync/RBD_MOSFLM_P4_processing/
> cns_P41_solution_18/RBD_P4PROCESS_18.1_refine_001.pdb
> n_use = 1586
> n_use_u_iso = 1586
> n_use_u_aniso = 0
> n_grad_site = 0
> n_grad_u_iso = 0
> n_grad_u_aniso = 0
> n_grad_occupancy = 0
> n_grad_fp = 0
> n_grad_fdp = 0
> n_anisotropic_flag = 0
> total number of scatterers = 1586
>
> Traceback (most recent call last):
> File "/usr/local/phenix-1.3-rc2/phenix/phenix/command_line/
> refine.py", line 5, in <module>
> command_line.run(command_name="phenix.refine", args=sys.argv[1:])
> File "/usr/local/phenix-1.3-rc2/phenix/phenix/refinement/
> command_line.py", line 99, in run
> map_manger.write_files()
> File "/usr/local/phenix-1.3-rc2/phenix/phenix/refinement/
> driver.py", line 1170, in write_files
> coeffs =
> self.refine_object.fmodel.map_coefficients(map_type=map_type)
> File "/usr/local/phenix-1.3-rc2/mmtbx/mmtbx/twinning/
> twin_f_model.py", line 2205, in map_coefficients
> result = result.customized_copy( data =
> result.data()*aniso_scale )
> RuntimeError: scitbx array_family range error
>
>
> Using version
>
> ---
> ---
> ---
> ----------------------------------------------------------------------
> PHENIX: Python-based Hierarchical ENvironment for Integrated
> Xtallography
> Version: 1.3
> Release tag: rc2
> cctbx tag: 2008_05_25_1144
> Platform: mac-ppc-osx osx-10.5.3
> User: francisreyes
> ---
> ---
> ---
> ----------------------------------------------------------------------
>
>
> Thanks
>
>
> FR
>
>
> ---------------------------------------------
> Francis Reyes M.Sc.
> 215 UCB
> University of Colorado at Boulder
>
> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>
> 8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
More information about the phenixbb
mailing list