[phenixbb] input initial TLS parameters
pafonine at lbl.gov
Sun Feb 24 09:44:14 PST 2008
> I tried to find a way to input initial TLS parameters for the
> groups into phenix.
There is absolutely no need to give phenix.refine a start input values
for TLS groups: phenix.refine determines them automatically. All you
need to provide are the selections for TLS groups.
> I know many times this is not advisable, but I wanted to test what
> comes out from TLSmd server.
This is not advisable, indeed (and not possible to do as well).
phenix.refine must do a better job in finding TLS parameters than TLSmd
server simply because phenix.refine uses the experimental data + very
sophisticated and robust refinement protocol, while the TLSmd server
relies on the B-factors in input PDB file (as far as I know, correct me
if it's not true).
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