[phenixbb] tlsanal
Pavel Afonine
PAfonine at lbl.gov
Tue Jul 1 15:22:21 PDT 2008
Hi John,
there are currently no specific tools in PHENIX to do this. I know some
people use TLSview set of tools:
http://pymmlib.sourceforge.net/tlsview/tlsview.html
although I'm not sure if it accepts phenix.refine style of TLS
selections, so you may need to re-format them.
Pavel.
On 6/30/2008 9:43 PM, john kryst wrote:
> Hi all !!
>
> I have coupls of questions regarding TLS in phenix.
>
> 1. Has anyone tried using program tlsviewer with phenix refined pdb.
> It is not able to detect TLS groups unless you modify your residue
> range in the pdb to refmac convention. Is there any other program
> available to visualize the TLS movements.
>
> 2. I would like to use tlsanal to see how much is the contibution from
> TLS to the ADP. Is there any utility availble in TLS to do it. If i
> need to use tlsanal.. what should i modify in the pdb.
>
> thanks
>
> regards
> John
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