[phenixbb] cif mods, .def, .cifs...
Bryan W. Lepore
bryan.lepore at umassmed.edu
Tue Jun 17 18:58:23 PDT 2008
using phenix 1.3b rc6 cctbx_tag 2007_11_18_2203
have a few questions :
can .cif modifications such as
data_mod = 5pho
residue_selection = resname GUA and name O5T
(from http://www.phenix-online.org/documentation/refinement.htm#anch281 )
be copy/pasted into the .def file so a .params file doesn't have to be
given on the command line? i.e. can't _everything_ go in the .def?
in the example where it says "data_mod_5pho" at the top of the .cif file,
is phenix looking for a file - .pdb, .params, .. - with that prefix?
in "data_mod = 5pho", does 5pho come from 5pho.cif? and it still needs to
be on the command line?
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