[phenixbb] phenix.twin_map_utils gives AttributeError: 'module' object has no attribute 'r_free_flags_params'

Peter Zwart PHZwart at lbl.gov
Wed May 21 09:50:46 PDT 2008


Try donwloading CCI_APPS. This should be fixed in that release.

(your cell and sg has no twin laws though, so you will just get a
normal map out of it)

P

2008/5/21 Francis E Reyes <Francis.Reyes at colorado.edu>:
> chem171-152-dhcp:exptl_fobs_phases_freeR_flags.mtz francisreyes$
> phenix.twin_map_utils xray_data.file=exptl_fobs_phases_freeR_flags.mtz
> model=MR.1_pdbset1_refine_007.pdb unit_cell=73.5,73.5,114,90,90,90
> space_group="P 41 21 2"
>
> twin_utils {
>   input {
>     unit_cell = 73.5 73.5 114 90 90 90
>     space_group = "P 41 21 2"
>     xray_data {
>       file_name = "exptl_fobs_phases_freeR_flags.mtz"
>       obs_labels = None
>       free_flag = None
>     }
>     model {
>       file_name = "MR.1_pdbset1_refine_007.pdb"
>     }
>   }
>   parameters {
>     twinning {
>       twin_law = None
>       max_delta = 3
>     }
>   }
>   output {
>     logfile = "twin_tools.log"
>     map_coeffs_root = "MAP_COEFFS"
>     obs_and_calc = "obs_and_calc.mtz"
>   }
> }
> Traceback (most recent call last):
>   File "/usr/local/phenix-1.3b-rc5/mmtbx/mmtbx/command_line/
> twin_map_utils.py", line 7, in <module>
>     twin_map_utils.run(args=sys.argv[1:])
>   File "/usr/local/phenix-1.3b-rc5/mmtbx/mmtbx/twinning/
> twin_map_utils.py", line 256, in run
>     tmp_params = utils.r_free_flags_params.extract()
> AttributeError: 'module' object has no attribute 'r_free_flags_params'
>
>
> Any ideas?
>
> Thanks
>
> FR
>
> ---------------------------------------------
> Francis Reyes M.Sc.
> 215 UCB
> University of Colorado at Boulder
>
> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>
> 8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
>



-- 
-----------------------------------------------------------------
P.H. Zwart
Beamline Scientist
Berkeley Center for Structural Biology
Lawrence Berkeley National Laboratories
1 Cyclotron Road, Berkeley, CA-94703, USA
Cell: 510 289 9246
BCSB: http://bcsb.als.lbl.gov
PHENIX: http://www.phenix-online.org
CCTBX: http://cctbx.sf.net
-----------------------------------------------------------------



More information about the phenixbb mailing list