[phenixbb] phenix.twin_map_utils gives AttributeError: 'module' object has no attribute 'r_free_flags_params'
Peter Zwart
PHZwart at lbl.gov
Wed May 21 09:50:46 PDT 2008
Try donwloading CCI_APPS. This should be fixed in that release.
(your cell and sg has no twin laws though, so you will just get a
normal map out of it)
P
2008/5/21 Francis E Reyes <Francis.Reyes at colorado.edu>:
> chem171-152-dhcp:exptl_fobs_phases_freeR_flags.mtz francisreyes$
> phenix.twin_map_utils xray_data.file=exptl_fobs_phases_freeR_flags.mtz
> model=MR.1_pdbset1_refine_007.pdb unit_cell=73.5,73.5,114,90,90,90
> space_group="P 41 21 2"
>
> twin_utils {
> input {
> unit_cell = 73.5 73.5 114 90 90 90
> space_group = "P 41 21 2"
> xray_data {
> file_name = "exptl_fobs_phases_freeR_flags.mtz"
> obs_labels = None
> free_flag = None
> }
> model {
> file_name = "MR.1_pdbset1_refine_007.pdb"
> }
> }
> parameters {
> twinning {
> twin_law = None
> max_delta = 3
> }
> }
> output {
> logfile = "twin_tools.log"
> map_coeffs_root = "MAP_COEFFS"
> obs_and_calc = "obs_and_calc.mtz"
> }
> }
> Traceback (most recent call last):
> File "/usr/local/phenix-1.3b-rc5/mmtbx/mmtbx/command_line/
> twin_map_utils.py", line 7, in <module>
> twin_map_utils.run(args=sys.argv[1:])
> File "/usr/local/phenix-1.3b-rc5/mmtbx/mmtbx/twinning/
> twin_map_utils.py", line 256, in run
> tmp_params = utils.r_free_flags_params.extract()
> AttributeError: 'module' object has no attribute 'r_free_flags_params'
>
>
> Any ideas?
>
> Thanks
>
> FR
>
> ---------------------------------------------
> Francis Reyes M.Sc.
> 215 UCB
> University of Colorado at Boulder
>
> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>
> 8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
>
--
-----------------------------------------------------------------
P.H. Zwart
Beamline Scientist
Berkeley Center for Structural Biology
Lawrence Berkeley National Laboratories
1 Cyclotron Road, Berkeley, CA-94703, USA
Cell: 510 289 9246
BCSB: http://bcsb.als.lbl.gov
PHENIX: http://www.phenix-online.org
CCTBX: http://cctbx.sf.net
-----------------------------------------------------------------
More information about the phenixbb
mailing list