Thomas C. Terwilliger
terwilliger at lanl.gov
Thu Oct 16 17:02:38 PDT 2008
Hi Pavel and Vladimir,
After all this discussion...I think there is something wrong with the
composite omit maps in the current version. They do not finish
correctly...I will check this out. If you instead just omit around the
atoms in a pdb file with "omit_box_pdb=target.pdb" that seems fine
I'm sorry for the problem.
All the best,
> Hi Tom,
> don't we need to add "maps_only=True" as well (as Manual suggests in
> section "Just make maps; don't do any building.";
> http://www.phenix-online.org/documentation/autobuild.htm) ?
> I'm asking because the original question was specific about it: compute
> map and "nothing extra".
> On 10/13/2008 2:17 PM, Thomas C. Terwilliger wrote:
>> Hi Vladimir,
>> You can do this with:
>> phenix.autobuild data=data.mtz model=coords.pdb
>> composite_omit_type=sa_omit nproc=4
>> All the best,
>> Tom T
>>> After phenix.refine stage I would like to get just the sa_omit map for
>>> whole assymetric unit (nothing extra). How can I do it?
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>>> phenixbb at phenix-online.org
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