[phenixbb] optimize weights error

Sean Johnson sean.johnson at usu.edu
Thu Oct 23 07:00:40 PDT 2008


Pavel,
Thanks.  The new version solved the problem.
Sean


Pavel Afonine wrote:
> Hi Sean,
>
> please get and install the latest version and most likely this will fix
> the problem:
>
> http://www.phenix-online.org/download/
>
> Please let me know if the problem still exist in the latest version.
>
> Pavel.
>
> On 10/21/2008 1:26 PM, Sean Johnson wrote:
>   
>> I just tried optimizing weights in phenix.refine using optimize_wxc=true
>> and optimize_wxu=true in the command line.  I got the following error:
>>
>>             ----------xray term weight optimization (wxc)----------
>>
>> Traceback (most recent call last):
>>   File
>> "/usr/local/phenix-1.3b-rc5/phenix/phenix/command_line/refine.py", line
>> 5, in <module>
>>     command_line.run(command_name="phenix.refine", args=sys.argv[1:])
>>   File
>> "/usr/local/phenix-1.3b-rc5/phenix/phenix/refinement/command_line.py",
>> line 82, in run
>>     call_back_after_monitor_collect=call_back_after_monitor_collect)
>>   File "/usr/local/phenix-1.3b-rc5/phenix/phenix/refinement/driver.py",
>> line 1150, in run
>>     call_back_after_monitor_collect = call_back_after_monitor_collect)
>>   File
>> "/usr/local/phenix-1.3b-rc5/phenix/phenix/refinement/strategies.py",
>> line 446, in refinement_machine
>>     log                           = log)
>>   File
>> "/usr/local/phenix-1.3b-rc5/phenix/phenix/refinement/weight_xray_chem.py",
>> line 252, in __init__
>>     self.wxc_optimization()
>>   File
>> "/usr/local/phenix-1.3b-rc5/phenix/phenix/refinement/weight_xray_chem.py",
>> line 507, in wxc_optimization
>>     wxc = self.holder.wxc
>> AttributeError: weight instance has no attribute 'holder'
>>
>>
>> Any suggestions?
>> Thanks,
>> Sean
>>
>>
>>     

-- 
Sean Johnson, PhD
R. Gaurth Hansen Assistant Professor
Utah State University
Department of Chemistry and Biochemistry
0300 Old Main Hill
Logan, UT 84322-0300
(435) 797-2089
(435) 797-3390 (fax)
sean.johnson at usu.edu




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