[phenixbb] phenix autobuild and omit map
rpai at berkeley.edu
rpai at berkeley.edu
Mon Apr 6 18:36:49 PDT 2009
Hi,
I have a loop that was improperly built when I ran autobuild. the density
according to the Fobs-Fcalc maps is not that great.
Someone told me that autobuild can use omit maps to build / rebuild the
loops so you dont have to do it by hand.
Looking at the manual, I found the command, but am a little confused.
The model used is the entire model correct?
the target.pdb is the chain or region that was not correctly built.
For iterative building...how many cycles should I go for?
phenix.autobuild data=w1.sca model=coords.pdb omit_box_pdb=target.pdb \
composite_omit_type=iterative_build_omit
thanks
Raj
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