[phenixbb] restrains for nucleaic acid base pairs
toro at embl.de
Tue Apr 7 00:22:15 PDT 2009
Thanks for the info. One more question: In half of the DNA the base
pairing is between symmetry related bases as the DNA structure (Holliday
junction) lies on a two-fold axis. Could it be a problem?
Pavel Afonine wrote:
> Hi Imre,
> you need to define custom bonds between these pairs:
> see section "Definition of custom bonds and angles".
> phenix.refine does not do it automatically.
> On 4/6/09 4:42 AM, Imre Toeroe wrote:
>> Does anybody know an easy way to restrain nucleic acid base pairs (base
>> stacking+Watson-Crick base pairing) in phenix.refine? I am refining
>> against a 3.3 A dataset.
>> phenixbb mailing list
>> phenixbb at phenix-online.org
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> phenixbb at phenix-online.org
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