[phenixbb] question about kick map

crystallogrphy qunwan1 at gmail.com
Fri Aug 28 18:11:44 PDT 2009


Hi,
I am trying to use kick map to remove model bias with the following script
phenix.refine MR.1_refine_data.mtz MR.1_refine_001_refine_001.pdb
output.prefix=refine-090828a simulated_annealing=True
simulated_annealing.start_temperature=8000 strategy=individual_sites
refine.params

However, the program says:
Sorry: Unknown file format: refine.params

I do not understand why the format of refine.params cannot be read, which
has the following contents. Does anyone know why?
refinement {
  electron_density_maps {
    map {
      mtz_label_amplitudes = 2FOFCWT
      mtz_label_phases = PH2FOFCWT
      likelihood_weighted = True
      obs_factor = 2
      calc_factor = 1
      kicked= True
      fill_missing_f_obs_with_weighted_f_model=True
    }
    map {
      mtz_label_amplitudes = FOFCWT
      mtz_label_phases = PHFOFCWT
      likelihood_weighted = True
      obs_factor = 1
      calc_factor = 1
      kicked= True
      fill_missing_f_obs_with_weighted_f_model=True
    }
}
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