[phenixbb] question about kick map
crystallogrphy
qunwan1 at gmail.com
Fri Aug 28 18:11:44 PDT 2009
Hi,
I am trying to use kick map to remove model bias with the following script
phenix.refine MR.1_refine_data.mtz MR.1_refine_001_refine_001.pdb
output.prefix=refine-090828a simulated_annealing=True
simulated_annealing.start_temperature=8000 strategy=individual_sites
refine.params
However, the program says:
Sorry: Unknown file format: refine.params
I do not understand why the format of refine.params cannot be read, which
has the following contents. Does anyone know why?
refinement {
electron_density_maps {
map {
mtz_label_amplitudes = 2FOFCWT
mtz_label_phases = PH2FOFCWT
likelihood_weighted = True
obs_factor = 2
calc_factor = 1
kicked= True
fill_missing_f_obs_with_weighted_f_model=True
}
map {
mtz_label_amplitudes = FOFCWT
mtz_label_phases = PHFOFCWT
likelihood_weighted = True
obs_factor = 1
calc_factor = 1
kicked= True
fill_missing_f_obs_with_weighted_f_model=True
}
}
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