[phenixbb] Phenix installation issue

[Paul Adams]

. <location-of-phenix>/phenix_env.sh [for sh/bash users]

On Dec 5, 2009, at 4:04 AM, smoniot at chemie.fu-berlin.de wrote:

> Well, I've dowloaded the installer again and changed my use of tar  
> from
> -xvf to -xf option. Then reran the installation
> It went through and everything seems to work now.
>
> The only thing is that i'm normally running bash shell and that phenix
> doesn't work so. sourcing the phenix_env does not work under bash  
> (setenv)
>
> Did I miss something or switching to tcsh is necessary ?
>
> Thanks for your help installing
>
> Seb
>
>> just a thought:
>>
>> if /net/anaconda is an nfs-shared drive, and you are trying to sudo
>> something on it from another workstation, it will fail because sudo
>> grants administrative privileges on the workstation, not on the  
>> server
>> where drive is housed.
>>
>> On Fri, 2009-12-04 at 04:59 +0100, smoniot at chemie.fu-berlin.de  
>> wrote:
>> Hi,
>>
>> I'm trying to install phenix on my computer (Linux distribution  
>> Kubuntu 64
>> bits (virtual machine but it should not be an issue)) but the  
>> installation
>> failed after some minutes ...
>> the last lines on the installation log file are :
>>
>> /bin/tar: ./build/intel-linux-2.6-x86_64/base/bin/wx-config : un lien
>> symbolique ne peut pas être créé vers
>> «/net/anaconda/scratch1/phenix/phenix-1.5-2/build/intel-linux-2.6- 
>> x86_64/base/lib/wx/config/gtk2-ansi-release-2.8»:
>> Opération non permise
>>
>> It's in french but basiccaly it can't create a symbolic link to
>> /net/anaconda.... not allowed.
>>
>> I don't get it since I did try both the sudo ./install command and  
>> the su
>> - root.
>>
>> If anyone experienced this and get to fix it I would be glad to  
>> know :)
>>
>> Thanks in advance
>>
>> Sebastien
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/phenixbb
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb

-- 
Paul Adams
Acting Division Director, Physical Biosciences Division, Lawrence  
Berkeley Lab
Adjunct Professor, Department of Bioengineering, U.C. Berkeley
Vice President for Technology, the Joint BioEnergy Institute
Head, Berkeley Center for Structural Biology

Building 64, Room 248
Tel: 1-510-486-4225, Fax: 1-510-486-5909
http://cci.lbl.gov/paul

Lawrence Berkeley Laboratory
1 Cyclotron Road
BLDG 64R0121
Berkeley, CA 94720, USA.

Executive Assistant: Patty Jimenez [ PAJimenez at lbl.gov ] 
[ 1-510-486-7963 ]
--