[phenixbb] optimizing target weights in phenix

Pavel Afonine PAfonine at lbl.gov
Wed Feb 18 15:10:30 PST 2009


Hi Yusuf,

please use the latest version of PHENIX or CCI Apps and most likely this 
error will go away:
http://www.phenix-online.org/download/

Pavel.


On 2/18/2009 3:06 PM, Yusuf Akhter wrote:
> *Hi Everybody,
> I am using phenix-1.3b.
> When i tried to use "Optimizing target weights" utility by typing 
> following command line
>
> *
> *phenix.refine data.hkl model.pdb optimize_wxc=true optimize_wxu=true
>
>
> I got following error. *
>
> Traceback (most recent call last):
>   File 
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/command_line/refine.py", 
> line 5, in <module>
>     command_line.run(command_name="phenix.refine", args=sys.argv[1:])
>   File 
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/command_line.py", 
> line 78, in run
>     call_back_after_monitor_collect=call_back_after_monitor_collect)
>   File 
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/driver.py", 
> line 1308, in run
>     log                     = log)
>   File 
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/strategies.py", 
> line 642, in refinement_machine
>     log                           = log)
>   File 
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/weight_xray_chem.py", 
> line 327, in __init__
>     self.wxc_optimization()
>   File 
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/weight_xray_chem.py", 
> line 450, in wxc_optimization
>     rw, rf, b, a, a_xc = self.wx_opt_helper(w = wxc_scale_0 * wxc, 
> sites=True)
>   File 
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/weight_xray_chem.py", 
> line 387, in wx_opt_helper
>     verbose             = 0)
> TypeError: __init__() takes at least 5 non-keyword arguments (3 given)
>
>
> *May anybody tell me please how can i fix these errors??
>
>
> Thanks in advance.
> yusuf
>
> *
>
>
>
>
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>
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