[phenixbb] Anyone have a phenix.resolve script for after Phaser ?
terwilliger at lanl.gov
Tue Jul 14 07:41:21 PDT 2009
That script looks fine. If you have NCS, then it is good to add
so that it can find the NCS. Also your script will build a model...to
skip that say
If you are building a model I'd recommend also trying phenix.autobuild
which will generally do much better than the resolve run in your script.
If you are wanting to run HYSS -> PHASER -> RESOLVE then you can also
just run phenix.autosol which will do that for you.
All the best,
On Jul 13, 2009, at 11:35 AM, Phil Jeffrey wrote:
> Although my usual m.o. is SHELX -> SHARP I'm exploring
> HYSS -> PHASER -> RESOLVE to see if the maps are any more
> I think I've got good scripts for the first two steps but I'm not
> about my resolve script which stands at:
> phenix.resolve << EOD
> hklin myp3_auto.mtz
> LABIN FP=F SIGFP=SIGF PHIB=PHIB FOM=FOM HLA=HLA HLB=HLB HLC=HLC
> hklout resolve.mtz
> solvent_content 0.45
> seq_file myp3.pir
> This runs, but I could not tell from delving into the documentation if
> this was ideal or not.
> Phil Jeffrey (a Luddite and not using the GUI)
> phenixbb mailing list
> phenixbb at phenix-online.org
Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: terwilliger at LANL.gov
Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the phenixbb