[phenixbb] phenix.refine issue
Dennis Wolan
Dennis.Wolan at ucsf.edu
Mon Jul 27 16:02:08 PDT 2009
I am having an issue with running a simple phenix.refine that I have
never encountered before. I get a list of issues and the program quits
with:
Traceback (most recent call last):
File "/usr/local/phenix-1.4-3/phenix/phenix/command_line/
refine.py", line 9, in <module>
command_line.run(command_name="phenix.refine", args=sys.argv[1:])
File "/usr/local/phenix-1.4-3/phenix/phenix/refinement/
command_line.py", line 68, in run
log=log)
File "/usr/local/phenix-1.4-3/phenix/phenix/refinement/
command_line.py", line 231, in __init__
reflection_file_server = self.reflection_file_server()
File "/usr/local/phenix-1.4-3/phenix/phenix/refinement/
command_line.py", line 566, in reflection_file_server
err=self.log)
File "/usr/local/phenix-1.4-3/iotbx/reflection_file_utils.py", line
393, in __init__
force_symmetry=self.force_symmetry))
File "/usr/local/phenix-1.4-3/iotbx/reflection_file_reader.py",
line 197, in as_miller_arrays
base_array_info=base_array_info)
File "/usr/local/phenix-1.4-3/iotbx/mtz/__init__.py", line 434, in
as_miller_arrays
and flex.min(column_group.sigmas()) > 0):
RuntimeError: min() argument is an empty array
I have no idea if the issue is with my pdb or mtz. I'm sure it's
something very simple that I just am not identifying.
Thanks in advance,
Dennis
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