[phenixbb] ncs

[Maia Cherney]

hi Pavel,
I made all restraint_groups in my parameter file. It's just too many of 
them. I thought that may be there is an option to say exclude residues 
125, 248 etc. By the way, I have  excessive_distance_limit = None. If I 
change it to some number, how does it work? the violating residues will 
be  excluded or the whole molecule will?

Maia

Pavel Afonine wrote:
> Hi Maia,
>
> you can easily do it by editing your parameter file:
>
> - change NCS group selections the way you want;
> - make sure that "main.ncs = True" and "ncs.find_automatically = False"
>
> If you have any problem with this: send me the parameters file and tell 
> which residues you want to exclude and I can edit it, so you have an 
> example for future reference.
>
> Pavel.
>
>
>
> On 6/27/09 9:12 AM, Maia Cherney wrote:
>   
>> Hi Pavel,
>> could you please tell me how to exclude several residues from ncs 
>> refinement. Should I make several restraint_groups or I can just give 
>> what to exclude?
>>
>> Maia
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>>     
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