[phenixbb] AssertionError in twin refinement...

Francis E Reyes Francis.Reyes at Colorado.EDU
Thu Mar 26 09:13:35 PDT 2009


Pavel

Don't worry about this error as I reprocessed the data and started the  
refinement over and it doesn't seem to be causing an error when doing  
twin refinement with water picking.

I imagine it has something to do with using a def file from a previous  
phenix version.

FR

On Mar 25, 2009, at 3:04 PM, Pavel Afonine wrote:

> Thanks for the files, I will have a look.
> Pavel.
>
>
> On 3/25/09 2:01 PM, Francis E Reyes wrote:
>>
>> Command:
>> phenix.refine *004.def --overwrite --unused_ok  
>> refinement.input.xray_data.r_free_flags.generate=True
>>
>>
>>
>> and the def file is enclosed.
>>
>>
>> I turned off ordered_solvent and it seems to be working OK with the  
>> twin refinement (I can actually make it into simulated annealing).
>>
>>
>>
>> On Mar 25, 2009, at 3:00 PM, Pavel Afonine wrote:
>>
>>>
>>
>> ---------------------------------------------
>> Francis Reyes M.Sc.
>> 215 UCB
>> University of Colorado at Boulder
>>
>> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>>
>> 8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D
>>
>>
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://www.phenix-online.org/mailman/listinfo/phenixbb
>>
> _______________________________________________
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---------------------------------------------
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder

gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D

8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D



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