[phenixbb] map files are missing in the output

Raja Dey rdey at usc.edu
Mon Mar 30 09:18:13 PDT 2009

    I recently installed phenix 1.4-3 and ran a refinement as follows:
phenix.refine ../zn/new-nfat1-dna_2.pdb ../nfatgata.mtz simulated_annealing=true strategy=rigid_body+individual_sites+group_adp output.prefix=new2-1

In the output I found all the files except two map files. Then I ran the earlier version(1.3-final) I had in my laptop using the same command and same files as above and I got all the files including two map files as well. Is there anything wrong that I might have done in 1.4-3?

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