[phenixbb] confusing instruction for autoMR
chern at ualberta.ca
Fri Sep 11 10:17:30 PDT 2009
This is the example from the website:
Run AutoMR using coords.pdb as search model, native.sca as data, assume
RMS between coords.pdb and true model is about 0.85 A, the sequence of
true model is seq.dat and there is 1 copy in the unit cell:
phenix.automr coords.pdb native.sca RMS=0.85 seq.dat copies=1 \
1. 1 copy of what: model.pdb or seq.dat? Model.pdb could be a dimer and
seq.dat a monomer.
2. 1 copy in the unit cell. Is it really in the unit cell? Usually we
use number of copies in the asymmetric unit.
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