[phenixbb] refining sugars
eozkan at stanford.edu
Wed Sep 30 09:02:51 PDT 2009
You don't need to create cif files; phenix has them. NAG is definitely
there, and you can have two NAGs linked by any biologically-relevant
glycosidic bond you want. You need to define the links, however. I think
posting the cif_link.params may get you more help.
On 9/30/09 8:49 AM, Tirumala Kumar Chowdary wrote:
> My question is related to the 'refining sugars in phenix' questions
> that have been appearing on the bb for the last two days.
> I am trying to refine my NAGs and somehow phenix is ignoring the sugars
> in my structure. Neither it is making a bond between my ASN and NAG nor
> NAG-NAG bond. My nag-nag.cif and cif_link.params are read properly,
> I am using in version 1.4.125 still. Is this the problem ? Does
> upgrading to any of the later build will help ?
> phenixbb mailing list
> phenixbb at phenix-online.org
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