[phenixbb] Refinement with partial model - question

Peter Grey petgxray at gmail.com
Thu Apr 1 03:58:04 PDT 2010

Dear Phenix Users,

I have a partial model at low resolution.  Is there a way  let Phenix.refine
know the model is not complete and that when a mask is calculated for bulk
solvent correction it should take this fact into consideration ?

Alternatively, can I use a solvent mask from density modification program in
Phenix.refine somehow ?

Alternatively, is there a program that will build dummy atoms (zero
occupancy) automatically in a map in all peaks above a certain sigma (i.e.
atoms just for mask calculation).

Thank you in advance,

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