[phenixbb] Autobuild with ligand in place?
claudiascotti at hotmail.com
Thu Apr 15 02:46:27 PDT 2010
Sorry for the probably easy question.
I'm trying to rebuild a model with Autobuild. The protein has a ligand, whose density is already well defined, thus that the input for the new autobuild run includes its coordinates as well.
When I start the autobuild run, however, I see that the ligand is removed before rebuilding, which leads the program to use the ligand density to try to rebuild loops, thus introducing errors.
How can I keep the ligand in place, please? Or is there any alternative solutions?
Dipartimento di Medicina Sperimentale
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