[phenixbb] Phenix Ligand Identification error

Rajan rajanvyas at gmail.com
Sat Apr 24 03:19:16 PDT 2010

Dear All


I was searching for a ligand present in the active site of my protein using
Ligand  Search in  "PHENIX"

but i stuck in between with an error :

A Python error was detected.  This may be a problem with the program
settings, an error in your data, or a bug; click "OK" to send a bug report
to the PHENIX developers.

AttributeError : ligand_identification instance has no attribute
  File "/home/programs/linux/phenix-
1.6.1-357/cctbx_project/libtbx/thread_utils.py", line 137, in run
    return_value = self._target(self._args, self._kwargs, self._c)

line 55, in __call__
    result = self.target()

line 1769, in __call__
    identify_ligands = ligand_identification(args=list(self.args),

line 308, in __init__
    ligand_identification.Run(self, params)

line 1454, in Run
    return self.connections['STOP ']

I am not able to identify the problem?

Please let me know if some one can identify the problem, i don't know
whether it is a bug or problem in my files.

Thanks for your suggestions in advance.


Current Address:

Rajan Vyas
Research Scholar
Deptt. of Biotechnology
Panjab University Chandigarh, India
160014    Mob. +919417374197
Fax: +91-172-2625254
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