[phenixbb] geometry weight and rmsd bonds - angles

[Ralf W. Grosse-Kunstleve]

> On a different but related note, is there some way to print out the list
> of bond length deviations from ideal values for all the restrained bonds
> in the structure?

Each time phenix.refine starts up it writes these to the .geo file
(unless you set write_geo_file=False), "Sorted by residual".
You can also set write_final_geo_file=True to get the sorted
restraints after refinement.

Ralf