[phenixbb] Failed to carry out AutoSol_scale_and_analyze_mad: None of the solve versions worked
Gino Cingolani
Gino.Cingolani at jefferson.edu
Tue Aug 17 10:21:43 PDT 2010
Dear Nat,
thanks for the prompt reply.
> Are you sure you have C-shell installed?
Yes it is installed.
> The second thing to check is SELinux support, although I
> thought this problem might have been fixed in 1.6.4.
I'm not sure I know how to do this.
> Is 'p9_se_w2.sca' reporting the same error message?
Yes, I gave the simple command:
phenix.autosol seq_file=seq.dat sites=4 atom_type=Se data=p9_se_w2.sca space_group="I4" unit_cell="113.949 113.949 32.474 90.000 90.000 90.00" resolution=2.4 thoroughness=quick
and quickly got:
********************************************************************************
Failed to carry out AutoSol_scale_and_analyze_mad:
None of the solve versions worked
********************************************************************************
Thanks!
Gino
******************************************************************************
Gino Cingolani, Ph.D.
Associate Professor
Thomas Jefferson University
Dept. of Biochemistry & Molecular Biology
233 South 10th Street - Room 826
Philadelphia PA 19107
Office (215) 503 4573
Lab (215) 503 4595
Fax (215) 923 2117
E-mail: gino.cingolani at jefferson.edu
******************************************************************************
"Nati non foste per viver come bruti, ma per seguir virtute e canoscenza"
("You were not born to live like brutes, but to follow virtue and knowledge")
Dante, The Divine Comedy (Inferno, XXVI, vv. 119-120)
---- Original message ----
>Date: Tue, 17 Aug 2010 10:14:25 -0700
>From: Nathaniel Echols <nechols at lbl.gov>
>Subject: Re: [phenixbb] Failed to carry out AutoSol_scale_and_analyze_mad: None of the solve versions worked
>To: PHENIX user mailing list <phenixbb at phenix-online.org>
>
> On Tue, Aug 17, 2010 at 9:54 AM, Gino Cingolani
> <Gino.Cingolani at jefferson.edu> wrote:
>
> Strangely, at home my latest version of Phenix finds
> absolutely nothing and quickly end with the following
> error message:
>
> ********************************************************************************
> Failed to carry out AutoSol_scale_and_analyze_mad:
>
> None of the solve versions worked
> ********************************************************************************
>
> To test is the problem is in our data, I quickly
> re-run 3 old mad/sad datasets of structures previously
> solved in the lab
> using the old (good) Solve and/or older Phenix
> versions.
> Sadly, all SAD/MAD searches quickly end with the same
> error message.
>
> Are you sure you have C-shell installed? I don't think
> Ubuntu installs it by default, but the wizards still
> require it. If it's missing, this would explain why
> the older versions fail too.
> The second thing to check is SELinux support, although I
> thought this problem might have been fixed in 1.6.4.
>
>
> I then tested the 'p9_se_w2.sca' that comes with
> Phenix.. and once again the same premature failure.
>
> I thought this didn't even use SOLVE (it is SAD so it
> would use Phaser) - is it reporting the same error
> message?
> I will try to test it on an Ubuntu machine later this
> week.
> -Nat
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