[phenixbb] question about xtriage

[Peter Zwart]

Hi,

This means that there is a file, named   >logfile.log<  owned by
someone else/with wrong permissions  in that directory.

Remove that file or say

phenix.xtriage B13_native.sca log=mylog.log

to try again

P



On 2 December 2010 16:25, crystallogrphy <qunwan1 at gmail.com> wrote:
> Hi,
> I am checking the space group of my data set using phenix.xtriage. However,
> the program terminated in the following scripts. Does anyone knows why and
> what should I do? Thanks!
>
> phenix.xtriage B13_native.sca
>
>
> Traceback (most recent call last):
>   File
> "/usr/local/phenix-1.6.4-486/cctbx_project/mmtbx/command_line/xtriage.py",
> line 20, in <module>
>     xtriage.run(args=sys.argv[1:])
>   File "/usr/local/phenix-1.6.4-486/cctbx_project/mmtbx/scaling/xtriage.py",
> line 866, in run
>     output_file = open( params.scaling.input.parameters.reporting.log  ,'w')
> IOError: [Errno 13] Permission denied: 'logfile.log'
>
>
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> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
>
>



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P.H. Zwart
Research Scientist
Berkeley Center for Structural Biology
Lawrence Berkeley National Laboratories
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