[phenixbb] Can PHENIX write the peak list to a PDB file?

Edward A. Berry BerryE at upstate.edu
Fri Dec 3 23:27:31 PST 2010

Mapman picks peaks to a pdb file-

Pavel Afonine wrote:
> Hi Morten,
> no, it's not yet there. A phenix.refine run outputs anomalous difference
> map, or you can use phenix.maps for this. This map will show the peaks
> you are interested in. Although I see how formatting this information as
> a PDB file may be somewhat helpful, I wasn't seeing it as the highest
> priority and so it's still pending in the list of things to do. I do not
> know what it takes to do the analogous job using ccp4, so can't really
> comment on this.
> Pavel.
> On 12/3/10 12:44 PM, Morten Grøftehauge wrote:
>> Dear Pavel,
>> Is this in? I wanted to do an anomalous peak search in a way that was
>> faster than the CCP4 route but it doesn't seem to be available.
>> Sincerely,
>> Morten Grøftehauge
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