[phenixbb] Loop fitting question
luke.rice at utsouthwestern.edu
Fri Dec 10 11:40:14 PST 2010
I am trying to see if I can save myself some time by using the loop
fitting tools in Phenix. I think I am stalling out because of a trivial
problem, but cursory googling, etc, has not helped. Sorry if I should
have tried harder. I appreciate any help.
I am using the gui, dev-601. My fasta sequence gets read fine because
the output reports the sequence of the missing residues. Whether I use
the loop library or not, I get the following error:
Unable to find suitable gap to fill
Then it appears to try to build the loop using sequence from a different
chain (I have three chains in my structure).
What am I doing wrong?
Luke M. Rice
Assistant Professor and
Thomas O. Hicks Scholar in Medical Research
Department of Biochemistry, ND10.300
UT Southwestern Medical Center
5323 Harry Hines Blvd.
Dallas, TX 75390-8816
phone: (214) 645-5931
email: Luke.Rice at UTSouthwestern.edu
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