[phenixbb] Loop fitting question

Luke Rice luke.rice at utsouthwestern.edu
Fri Dec 10 11:40:14 PST 2010

Hi All,

I am trying to see if I can save myself some time by using the loop 
fitting tools in Phenix. I think I am stalling out because of a trivial 
problem, but cursory googling, etc, has not helped. Sorry if I should 
have tried harder. I appreciate any help.

I am using the gui, dev-601. My fasta sequence gets read fine because 
the output reports the sequence of the missing residues. Whether I use 
the loop library or not, I get the following error:

Unable to find suitable gap to fill

Then it appears to try to build the loop using sequence from a different 
chain (I have three chains in my structure).

What am I doing wrong?


Luke M. Rice
Assistant Professor and
Thomas O. Hicks Scholar in Medical Research
Department of Biochemistry, ND10.300
UT Southwestern Medical Center
5323 Harry Hines Blvd.
Dallas, TX 75390-8816
phone: (214) 645-5931
email: Luke.Rice at UTSouthwestern.edu

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