[phenixbb] segmentation fault
jens j birktoft
jb160 at nyu.edu
Tue Jun 1 07:18:01 PDT 2010
Hi all,
Trying to install nightly release 421 fails, giving the following error
OS is 2.6.32.12-115.fc12.x86_64
Installation of previous versions have worked without problems, no changes
(kernel updates etc) has been made to the OS
Any suggestions will be appreciated
Jens
# ./install
==========================================================================
PHENIX Installation
version: dev
release tag: 421
machine type: intel-linux-2.6-x86_64
OS version: linux
user shell: /bin/bash
destination: /usr/local
==========================================================================
Installing from binary bundle
==========================================================================
bundle file:
bundle-dev-421-intel-linux-2.6-x86_64.tar.gz
PHENIX installation source directory set to:
/My_Downloads/PHENIX/phenix-installer-dev-421_64bit
PHENIX installation target directory <PHENIX_LOC > set to:
/usr/local/phenix-dev-421
PHENIX installation build directory set to:
<PHENIX_LOC > /build/intel-linux-2.6-x86_64
PHENIX temporary build directory set to:
build-binary/intel-linux-2.6-x86_64/jens-HPE180/tmp
PHENIX installation log directory set to:
build-binary/intel-linux-2.6-x86_64/jens-HPE180/log
making directory:
/usr/local/phenix-dev-421
making directory:
<PHENIX_LOC>/build/intel-linux-2.6-x86_64
installing binary components
removing existing files in
build-binary/intel-linux-2.6-x86_64/jens-HPE180/tmp/binary
finding installed versions
finding binary versions
no pre-existing binary components detected
installing new binary package
setting environment
configuring PHENIX components
/My_Downloads/PHENIX/phenix-installer-dev-421_64bit/bin/install-from-binary:
line 347: 3735 Segmentation fault (core dumped)
$PHENIX_BUILD/base/bin/python $PHENIX_LOC/cctbx_project/libtbx/configure.py
--current_working_directory="$PHENIX_BUILD" $PHENIX_COMPONENTS >>
$PHENIX_LOG/binary.log 2>&1
Error configuring: see
/My_Downloads/PHENIX/phenix-installer-dev-421_64bit/build-binary/intel-linux-2.6-x86_64/jens-HPE180/log/binary.log
for details
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20100601/d7f0ffbe/attachment-0003.htm>
More information about the phenixbb
mailing list