[phenixbb] segmentation fault

jens j birktoft jb160 at nyu.edu
Tue Jun 1 07:18:01 PDT 2010


Hi all,

Trying to install nightly release 421 fails, giving the following error

OS is  2.6.32.12-115.fc12.x86_64

Installation of previous versions have worked without problems,  no changes
(kernel updates etc) has been made to the OS

Any suggestions will be appreciated

Jens


# ./install

==========================================================================
                      PHENIX Installation

                      version: dev
                  release tag: 421
                 machine type: intel-linux-2.6-x86_64
                   OS version: linux
                   user shell: /bin/bash
                  destination: /usr/local

==========================================================================
                     Installing from binary bundle
==========================================================================

bundle file:
  bundle-dev-421-intel-linux-2.6-x86_64.tar.gz
PHENIX installation source directory set to:
  /My_Downloads/PHENIX/phenix-installer-dev-421_64bit
PHENIX installation target directory <PHENIX_LOC > set to:
  /usr/local/phenix-dev-421
PHENIX installation build directory set to:
  <PHENIX_LOC > /build/intel-linux-2.6-x86_64
PHENIX temporary build directory set to:
  build-binary/intel-linux-2.6-x86_64/jens-HPE180/tmp
PHENIX installation log directory set to:
  build-binary/intel-linux-2.6-x86_64/jens-HPE180/log

making directory:
  /usr/local/phenix-dev-421
making directory:
  <PHENIX_LOC>/build/intel-linux-2.6-x86_64

installing binary components

removing existing files in
build-binary/intel-linux-2.6-x86_64/jens-HPE180/tmp/binary
finding installed versions
finding binary versions
no pre-existing binary components detected
installing new binary package

setting environment

configuring PHENIX components

/My_Downloads/PHENIX/phenix-installer-dev-421_64bit/bin/install-from-binary:
line 347:  3735 Segmentation fault      (core dumped)
$PHENIX_BUILD/base/bin/python $PHENIX_LOC/cctbx_project/libtbx/configure.py

--current_working_directory="$PHENIX_BUILD" $PHENIX_COMPONENTS >>
$PHENIX_LOG/binary.log 2>&1

Error configuring: see
/My_Downloads/PHENIX/phenix-installer-dev-421_64bit/build-binary/intel-linux-2.6-x86_64/jens-HPE180/log/binary.log
for details
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