[phenixbb] Autobuild error message, please help!!!
신인철
ichul96 at snu.ac.kr
Wed Jun 9 23:23:36 PDT 2010
Hi, everyone
I have a problem in running phenix.automr
I started AutoMR with the command:
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phenix.automr build=True data=ZZZZZZ_H-Nat_x22_P3221_from_P321.sca \
coords='1_SMsp.pdb 2_SMsp.pdb 3_SMsp.pdb 4_SMsp.pdb' \
identity='40 32 29 27' seq_file=ZZZZZZ_seq.dat
input_seq_file=ZZZZZZ_seq.dat \
copies=4
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AutoMR process seems to be done without any error
but during autobuild process, I encounterd an error message as follows
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Re-using input PDB coordinates in build this cycle
Running 3 parallel build jobs
Standard build in parallel starting with refine.pdb_1
This is the first try at building this model
Setting background=False as nproc=1
Try: 1 building 1 model
Try: 2 building 1 model
Try: 3 building 1 model
Running up to 1 jobs in parallel... with total of 3 jobs
Splitting work into 3 jobs and running 1 at a time with csh in
/data1/disk02/icshin/UGI/MR/PHENIX_MR_8/AutoBuild_run_1_/TEMP0
Starting job 1...
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Failed to carry out AutoBuild_build_cycle:
child process stderr output:
command: 'csh
/data1/disk02/icshin/ZZZ/MR/PHENIX_MR_8/AutoBuild_run_1_/TEMP0/RUN_FILE_1'
icshin_com: No such file or directory.
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What am I supposed to do? Please, help me!
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Inchul Shin
Structural Biology Lab. CALS. Seoul Nationl Univ.
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