[phenixbb] phaser spacegroup within phenix

Nathaniel Echols nechols at lbl.gov
Wed Jun 16 07:29:51 PDT 2010


On Wed, Jun 16, 2010 at 5:01 AM, Francis E Reyes <Francis.Reyes at colorado.edu
> wrote:

> use_all_plausible_sg = False is the default in the command line version of
> phenix automr... was it enabled by default for the gui?
>

For AutoMR, no (the GUI rarely modifies the default behavior of programs).
 After looking at the AutoMr code, I'm still not exactly sure what this
option does, but I assume it's equivalent to either searching "all" or
"hand" (which I think means the space group and its enantiomorph).

For Phaser, the default is now "hand", for both the command-line version and
the GUI.  CCP4 is using an older version of Phaser, which I believe only
used the assigned space group and didn't try anything else.

-Nat
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