[phenixbb] Input NCS operators for AutoBuild

Mark A Saper saper at umich.edu
Tue May 4 19:54:50 PDT 2010

This questions may be best answered by Tom.

Does anyone know how to generate a custom NCS definition file that AutoBuild will read from the refinement format?  The parameter is input_ncs_file =

I used phenix.simple_ncs_from_pdb to generate 3 ncs format files.  But I could not figure out how to make the program use my definitions.  In any case simple_ncs_from_pdb outputs 3 formats in ./phenix/tmp:


I tried the last one, but it has no residue or chain specification.  Should I use the .ncs_spec?  The first one is for phenix.refine.

Thanks, Mark
Mark A. Saper, Ph.D.				
Associate Professor of Biological Chemistry
University of Michigan

Biophysics, 3040 Chemistry Building
930 N University Ave
Ann Arbor MI  48109-1055 U.S.A.

saper at umich.edu     phone (734) 764-3353     fax (734) 764-3323
http://www.biochem.med.umich.edu/?q=saper	http://www.strucbio.umich.edu/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20100504/65e4702e/attachment-0003.htm>

More information about the phenixbb mailing list