[phenixbb] Input NCS operators for AutoBuild
Mark A Saper
saper at umich.edu
Tue May 4 19:54:50 PDT 2010
This questions may be best answered by Tom.
Does anyone know how to generate a custom NCS definition file that AutoBuild will read from the refinement format? The parameter is input_ncs_file =
I used phenix.simple_ncs_from_pdb to generate 3 ncs format files. But I could not figure out how to make the program use my definitions. In any case simple_ncs_from_pdb outputs 3 formats in ./phenix/tmp:
simple_ncs_from_pdb.ncs
simple_ncs_from_pdb.ncs_spec
simple_ncs_from_pdb.resolve
I tried the last one, but it has no residue or chain specification. Should I use the .ncs_spec? The first one is for phenix.refine.
Thanks, Mark
_________________________________
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry
University of Michigan
Biophysics, 3040 Chemistry Building
930 N University Ave
Ann Arbor MI 48109-1055 U.S.A.
saper at umich.edu phone (734) 764-3353 fax (734) 764-3323
http://www.biochem.med.umich.edu/?q=saper http://www.strucbio.umich.edu/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20100504/65e4702e/attachment-0003.htm>
More information about the phenixbb
mailing list