[phenixbb] kicked maps

[Maia Cherney]

Thank you, it worked.

Maia

Pavel Afonine wrote:
> Hi Maia,
>
> change names of the labels for custom defined maps. For example:
>
>   map {
>     mtz_label_amplitudes = "2FOFCWT_kick"
>     mtz_label_phases = "PH2FOFCWT_kick"
>     likelihood_weighted = True
>     obs_factor = 2
>     calc_factor = 1
>     kicked = True
>     fill_missing_f_obs_with_weighted_f_model = True
>   }
>   map {
>     mtz_label_amplitudes = "FOFCWT_kick"
>     mtz_label_phases = "PHFOFCWT_kick"
>     likelihood_weighted = True
>     obs_factor = 1
>     calc_factor = 1
>     kicked = True
>     fill_missing_f_obs_with_weighted_f_model = False
>   }
>
> Pavel.
>
>
> On 5/13/10 11:26 AM, Maia Cherney wrote:
>>
>> Hi Pavel,
>> I ran phenix.refine to produce a kicked map after deleting my ligand 
>> (to get an omit map).
>> I got an error message. Sorry: Duplicate mtz_label_amplitudes:2FOFCWT
>>
>>
>> Here is part of my .def file: How should I change it?
>>
>> map {
>>      mtz_label_amplitudes = None
>>      mtz_label_phases = None
>>      likelihood_weighted = None
>>      obs_factor = None
>>      calc_factor = None
>>      kicked = False
>>      fill_missing_f_obs_with_weighted_f_model = True
>>    }
>>    map {
>>      mtz_label_amplitudes = "2FOFCWT"
>>      mtz_label_phases = "PH2FOFCWT"
>>      likelihood_weighted = True
>>      obs_factor = 2
>>      calc_factor = 1
>>      kicked = True
>>      fill_missing_f_obs_with_weighted_f_model = True
>>    }
>>    map {
>>      mtz_label_amplitudes = "FOFCWT"
>>      mtz_label_phases = "PHFOFCWT"
>>      likelihood_weighted = True
>>      obs_factor = 1
>>      calc_factor = 1
>>      kicked = True
>>      fill_missing_f_obs_with_weighted_f_model = False
>>    }
>>    map {
>>      mtz_label_amplitudes = "2FOFCWT_no_fill"
>>      mtz_label_phases = "PH2FOFCWT_no_fill"
>>      likelihood_weighted = True
>>      obs_factor = 2
>>      calc_factor = 1
>>      kicked = False
>>      fill_missing_f_obs_with_weighted_f_model = False
>>    }
>>
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