[phenixbb] segmentation fault

Nathaniel Echols nechols at lbl.gov
Mon May 24 07:15:38 PDT 2010

On Mon, May 24, 2010 at 4:56 AM, Harry M. Greenblatt <
Harry.Greenblatt at weizmann.ac.il> wrote:

>    We had the phenix 1.6.1 GUI running on a fedora core 12 machine; it was
> thought, for different reasons, that a kernel upgrade would address certain
> issues unrelated to phenix.
> The machine is now running (64 bit) and phenix now gives
> a segmentation fault.  Any suggestions?

I'm afraid you're probably going to need to compile from source to get
around this:


It takes several hours to build, so if you have multiple
processors/cores, we recommend adding "--nproc=X" (were X = number of
processes to run simultaneously) to the install command to speed it

Just curious - did you upgrade the kernel from scratch, or use a
fedora package, and does anything else break, or just Phenix?  I've
seen kernel upgrades cause havoc before, but usually all sorts of
programs stop working, not just one.

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