[phenixbb] offtopic: Problem with Pymol showing maps
PAfonine at lbl.gov
Fri May 28 20:58:01 PDT 2010
> I have several maps from Phenix and want to draw some pictures in
> Pymol. I am opening the files, renamed to ccp4 or map, or not,
I'm slightly puzzled about this... Are you trying to open X-plor
formatted maps? By default phenix.refine writes out only MTZ with map
coefficients. Basically, my question is: how you obtained the maps that
you are trying to see in PyMol?
> If you know some nice simple program to do nice pictures of the
> electron densities- share your knowledge please!
I always use PyMol for this - it is simple, and you can find all basic
commands and temples on the web.
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