[phenixbb] error in making links

Nathaniel Echols nechols at lbl.gov
Mon Nov 1 12:19:33 PDT 2010

On Mon, Nov 1, 2010 at 12:11 PM, Phoebe Rice <price at uchicago.edu> wrote:
> Hi BB,
>  I wanted to run phenix on a structure from the database with covalent serine-DNA links, 1zr4.
>  The "ready-set" feature to prepare restraints from the pdb link records sounded lovely, but fails with the message "Error interpreting command line argument parament definition: "1ZR4.link.edits" RuntimeError: Unexpected end of input"

The error message means that the file was mangled somehow.  I just
tried this myself and it worked; I've attached the file I used.  Does
what you have look similar?

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