[phenixbb] automr : ensemble on command line

Bryan Lepore bryanlepore at gmail.com
Thu Nov 11 15:39:30 PST 2010


i keep getting this error  :

The number of entries in identity_list ([80.0, 80.0]) needs to be
the same as the number of entries in ensemble_1.coords (1)

on the command line, i specify the ensemble as :

coords='MR_probe_5_match_to_9.pdb MR_probe_9.pdb' identity='80 80'

it gets picked up like this :
  ensembleID = "ensemble_1"
  copies_to_find = None
  coords = "MR_probe_5.pdb MR_probe_9.pdb"
  identity = 80 80

i tried using quotes or not, and rmsd. i'm using "\" for the shell -
what am i missing here? any clues to look for?


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